Search Results - "Benjamin Sobkowiak"

Early prediction of Mycobacterium tuberculosis transmission clusters using supervised learning models

Omid Gheysar Gharamaleki, Caroline Colijn, Inna Sekirov, James C. Johnston, Benjamin Sobkowiak

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Distribution and transmission of M. tuberculosis in a high-HIV prevalence city in Malawi: A genomic and spatial analysis.

Melanie H Chitwood, Elizabeth L Corbett, Victor Ndhlovu, Benjamin Sobkowiak, Caroline Colijn, Jason R Andrews, Rachael M Burke, Patrick G T Cudahy, Peter J Dodd, Jeffrey W Imai-Eaton, David M Engelthaler, Megan Folkerts, Helena R A Feasey, Yu Lan, Jen Lewis, Jennifer McNichol, Nicolas A Menzies, Geoffrey Chipungu, Marriott Nliwasa, Daniel M Weinberger, Joshua L Warren, Joshua A Salomon, Peter MacPherson, Ted Cohen

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Phylogeographic Analysis of Mycobacterium kansasii Isolates from Patients with M. kansasii Lung Disease in Industrialized City, Taiwan

Patrick George Tobias Cudahy, Po-Chen Liu, Joshua L. Warren, Benjamin Sobkowiak, Chongguang Yang, Thomas R. Ioerger, Chieh-Yin Wu, Po-Liang Lu, Jann-Yuan Wang, Hsiao-Han Chang, Hung-Ling Huang, Ted Cohen, Hsien-Ho Lin

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The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova

Melanie H. Chitwood, Caroline Colijn, Chongguang Yang, Valeriu Crudu, Nelly Ciobanu, Alexandru Codreanu, Jaehee Kim, Isabel Rancu, Kyu Rhee, Ted Cohen, Benjamin Sobkowiak

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Author Correction: The recent rapid expansion of multidrug resistant Ural lineage Mycobacterium tuberculosis in Moldova

Melanie H. Chitwood, Caroline Colijn, Chongguang Yang, Valeriu Crudu, Nelly Ciobanu, Alexandru Codreanu, Jaehee Kim, Isabel Rancu, Kyu Rhee, Ted Cohen, Benjamin Sobkowiak

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Corrigendum to—'Identifying local foci of tuberculosis transmission in Moldova using a spatial multinomial logistic regression model' [eBioMedicine 102(2024) 105085]

Yu Lan, Valeriu Crudu, Nelly Ciobanu, Alexandru Codreanu, Melanie H. Chitwood, Benjamin Sobkowiak, Joshua L. Warren, Ted Cohen

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Identifying local foci of tuberculosis transmission in Moldova using a spatial multinomial logistic regression modelResearch in context

Yu Lan, Valeriu Crudu, Nelly Ciobanu, Alexandru Codreanu, Melanie H. Chitwood, Benjamin Sobkowiak, Joshua L. Warren, Ted Cohen

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Genomic epidemiology offers high resolution estimates of serial intervals for COVID-19

Jessica E. Stockdale, Kurnia Susvitasari, Paul Tupper, Benjamin Sobkowiak, Nicola Mulberry, Anders Gonçalves da Silva, Anne E. Watt, Norelle L. Sherry, Corinna Minko, Benjamin P. Howden, Courtney R. Lane, Caroline Colijn

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Cov2clusters: genomic clustering of SARS-CoV-2 sequences

Benjamin Sobkowiak, Kimia Kamelian, James E. A. Zlosnik, John Tyson, Anders Gonçalves da Silva, Linda M. N. Hoang, Natalie Prystajecky, Caroline Colijn

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Phylogeography and transmission of M. tuberculosis in Moldova: A prospective genomic analysis.

Chongguang Yang, Benjamin Sobkowiak, Vijay Naidu, Alexandru Codreanu, Nelly Ciobanu, Kenneth S Gunasekera, Melanie H Chitwood, Sofia Alexandru, Stela Bivol, Marcus Russi, Joshua Havumaki, Patrick Cudahy, Heather Fosburgh, Christopher J Allender, Heather Centner, David M Engelthaler, Nicolas A Menzies, Joshua L Warren, Valeriu Crudu, Caroline Colijn, Ted Cohen

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Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data

Benjamin Sobkowiak, Judith R. Glynn, Rein M. G. J. Houben, Kim Mallard, Jody E. Phelan, José Afonso Guerra-Assunção, Louis Banda, Themba Mzembe, Miguel Viveiros, Ruth McNerney, Julian Parkhill, Amelia C. Crampin, Taane G. Clark

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Genetic Diversity of norA, Coding for a Main Efflux Pump of Staphylococcus aureus

Sofia Santos Costa, Benjamin Sobkowiak, Ricardo Parreira, Jonathan D. Edgeworth, Miguel Viveiros, Taane G. Clark, Isabel Couto

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Do global diversity patterns of vertebrates reflect those of monocots?

Lynsey McInnes, F Andrew Jones, C David L Orme, Benjamin Sobkowiak, Timothy G Barraclough, Mark W Chase, Rafaël Govaerts, Douglas E Soltis, Pamela S Soltis, Vincent Savolainen

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