Search Results - "Genome-scale modeling"

Flux Balance Analysis of Mammalian Cell Systems

Morrissey, James^Aff4, Strain, Benjamin^Aff4, Kontoravdi, Cleo^Aff4

Ceroni, Francesca^Aff2, Polizzi, Karen^Aff3, Walker, John M.^Aff1

Computational biology predicts metabolic engineering targets for increased production of 103 valuable chemicals in yeast

Domenzain Del Castillo Cerecer, Iván, 1991, Lu, Yao, Wang, Haoyu, Shi, Junling, Lu, Hongzhong, 1987, Nielsen, Jens B, 1962

electronic

Systems metabolic engineering of Corynebacterium glutamicum for efficient l-tryptophan production

Yufei Dong, Zhen Chen

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Investigating intestinal epithelium metabolic dysfunction in celiac disease using personalized genome-scale models

Chloe V. McCreery, Drew Alessi, Katarina Mollo, Alessio Fasano, Ali R. Zomorrodi

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Implementation of a Clostridium luticellarii genome-scale model for upgrading syngas fermentations

William T. Scott, Jr., Siemen Rockx, Quinten Mariën, Alberte Regueira, Pieter Candry, Ramon Ganigué, Jasper J. Koehorst, Peter J. Schaap

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Computer-assisted multilevel optimization of malonyl-CoA availability in Pseudomonas putida

Batianis, Christos ^{a, b, 1}, van Rosmalen, Rik P. ^{a, 1, 2}, Moñino Fernández, Pedro ^{a, b}, Labanaris, Konstantinos ^b, Asin-Garcia, Enrique ^{a, b}, Martin-Pascual, Maria ^{a, b}, Jeschek, Markus ^{c, d}, Weusthuis, Ruud A. ^b, Suarez-Diez, Maria ^a, Martins dos Santos, Vitor A.P. ^{a, b, e, ⁎}

Modeling and analysis of the rapid aerobic metabolism of Geobacillus sp. LC300 / Emil Elvingson Ljungqvist.

Ljungqvist, Emil Elvingson

Book , 2024

Constructing and Analyzing Metabolic Flux Models of Microbial Communities

Faria, José P.^{Aff4, Aff5}, Khazaei, Tahmineh^Aff6, Edirisinghe, Janaka N.^{Aff4, Aff7}, Weisenhorn, Pamela^{Aff7, Aff10}, Seaver, Samuel M. D.^{Aff4, Aff7}, Conrad, Neal^Aff7, Harris, Nomi^Aff8, DeJongh, Matthew^Aff9, Henry, Christopher S.^{Aff4, Aff7}

McGenity, Terry J.^Aff1, Timmis, Kenneth N.^Aff2, Nogales, Balbina^Aff3

Systems-Level Modeling for CRISPR-Based Metabolic Engineering

Cardiff, Ryan A. L.^{aff1, aff2, aff3}, Carothers, James M.^{aff1, aff3}, Zalatan, Jesse G.^{aff1, aff2}, Sauro, Herbert M.^{aff1, aff4}

Plant Genome-Scale Modeling and Implementation

Dal’Molin, Cristiana G. O.^Aff4, Quek, Lake-Ee^Aff4, Palfreyman, Robin W.^Aff4, Nielsen, Lars K.^Aff4

Dieuaide-Noubhani, Martine^Aff2, Alonso, Ana Paula^Aff3, Walker, John M.^Aff1

Genome-Scale Model Management and Comparison

Pabinger, Stephan^Aff00011, Trajanoski, Zlatko^Aff00011

Alper, Hal S.^AffID1

A Framework Linking Glycolytic Metabolic Capabilities and Tumor Dynamics

Tzamali, E., Tzedakis, G., Sakkalis, V.

Microbiome modeling: a beginner's guide

Emanuel Lange, Lena Kranert, Jacob Krüger, Dirk Benndorf, Robert Heyer

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A benchmark of optimization solvers for genome-scale metabolic modeling of organisms and communities

Daniel Machado

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Enzyme promiscuity shapes adaptation to novel growth substrates.

Guzmán, Gabriela I, Sandberg, Troy E, LaCroix, Ryan A, Nyerges, Ákos, Papp, Henrietta, de Raad, Markus, King, Zachary A, Hefner, Ying, Northen, Trent R, Notebaart, Richard A, Pál, Csaba, Palsson, Bernhard O, Papp, Balázs, Feist, Adam M

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A systems biology understanding of protein constraints in the metabolism of budding yeasts

Domenzain Del Castillo Cerecer, Iván, 1991

electronic

Engineering yeast for improved recombinant protein production

Wang, Yanyan, 1989

electronic

C1-based biomanufacturing: Advances, challenges and perspectives

Lv, Xueqin ^{a, b, c}, Yu, Wenwen ^{a, b}, Zhang, Chenyang ^{a, b}, Ning, Peng ^{a, b}, Li, Jianghua ^{a, b}, Liu, Yanfeng ^{a, b}, Du, Guocheng ^{a, b}, Liu, Long ^{a, b, ⁎}

Genome-scale modeling of Chinese hamster ovary cells by hybrid semi-parametric flux balance analysis

Ramos, João R. C., Oliveira, Gil P., Dumas, Patrick, Oliveira, Rui^{Aff1, IDs00449022027959_cor4}