Search Results - "Metabolic modelling"

A Machine Learning Approach for Predicting Essentiality of Metabolic Genes

Freischem, Lilli J.^Aff3, Oyarzún, Diego A.^{Aff4, Aff5}

Braman, Jeffrey Carl^Aff2, Walker, John M.^Aff1

Identifying Key In Silico Knockout for Enhancement of Limonene Yield Through Dynamic Metabolic Modelling

Khanijou, Jasmeet Kaur^Aff3, Hee, Yan Ting^Aff4, Selvarajoo, Kumar^{Aff4, Aff5, Aff6}

Bizzarri, Mariano^Aff2, Walker, John M.^Aff1

Drug Target Prediction Using Context-Specific Metabolic Models Reconstructed from rFASTCORMICS

Bintener, Tamara^Aff3, Pacheco, Maria Pires^Aff3, Kishk, Ali^Aff3, Didier, Jeff^Aff3, Sauter, Thomas^Aff3

Baiocchi, Marta^Aff2, Walker, John M.^Aff1

Metabolic modelling reveals increased autonomy and antagonism in type 2 diabetic gut microbiota

Kadibalban, A Samer^{Aff1, Aff6}, Künstner, Axel, Schröder, Torsten^{Aff3, Aff4}, Zauleck, Julius, Witt, Oliver, Marinos, Georgios^{Aff1, Aff5}, Kaleta, Christoph^{Aff1, IDs4432002500100w_cor1}

System-level characterization of engineered and evolved formatotrophic E. coli strains

Suzan Yilmaz, Boas Kanis, Rensco A.H. Hogers, Sara Benito-Vaquerizo, Jörg Kahnt, Timo Glatter, Beau Dronsella, Tobias J. Erb, Maria Suarez-Diez, Nico J. Claassens

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Insights into optimization of oleaginous fungi – genome-scale metabolic reconstruction and analysis of Umbelopsis sp. WA50703

Mikołaj Dziurzyński, Maksymilian E. Nowak, Maria Furman, Alicja Okrasińska, Julia Pawłowska, Marco Fondi

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Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimers disease.

Martinelli, Filippo, Heinken, Almut, Henning, Ann-Kristin, Ulmer, Maria, Hensen, Tim, González, Antonio, Arnold, Matthias, Asthana, Sanjay, Budde, Kathrin, Engelman, Corinne, Estaki, Mehrbod, Grabe, Hans-Jörgen, Heston, Margo, Johnson, Sterling, Kastenmüller, Gabi, Martino, Cameron, McDonald, Daniel, Rey, Federico, Kilimann, Ingo, Peters, Olive, Wang, Xiao, Spruth, Eike, Schneider, Anja, Fliessbach, Klaus, Wiltfang, Jens, Hansen, Niels, Glanz, Wenzel, Buerger, Katharina, Janowitz, Daniel, Laske, Christoph, Munk, Matthias, Spottke, Annika, Roy, Nina, Nauck, Matthias, Teipel, Stefan, Kaddurah-Daouk, Rima, Bendlin, Barbara, Hertel, Johannes, Thiele, Ines, Knight, Rob

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Biocontrol in built environments to reduce pathogen exposure and infection risk.

Gottel, Neil, Hill, Megan, Neal, Maxwell, Zengler, Karsten, Gilbert, Jack, Allard, Sarah

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Tailored impact of dietary fibers on gut microbiota: a multi-omics comparison on the lean and obese microbial communities

Dell’Olio, Andrea, Scott Jr., William T.^{Aff3, Aff4}, Taroncher-Ferrer, Silvia, San Onofre, Nadia^{Aff6, Aff7}, Soriano, José Miguel^{Aff5, Aff6, Aff8}, Rubert, Josep^{Aff1, Aff2, IDs4016802401975x_cor6}

Bdellovibrio’s prey-independent lifestyle is fueled by amino acids as a carbon source

Herencias, Cristina^{Aff1, Aff5, IDs0025302413250y_cor1}, Rivero-Buceta, Virginia^{Aff2, Aff6}, Salgado, Sergio^{Aff2, Aff6}, Hernández-Herreros, Natalia^{Aff2, Aff6}, Baquero, Fernando^{Aff1, Aff4}, del Campo, Rosa^{Aff1, Aff5}, Nogales, Juan^{Aff3, Aff6}, Prieto, M. Auxiliadora^{Aff2, Aff6, IDs0025302413250y_cor2}

A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques

Fresnais, Louison^{Aff1, Aff2, IDs1285902405845z_cor1}, Perin, Olivier, Riu, Anne, Grall, Romain, Ott, Alban, Fromenty, Bernard, Gallardo, Jean-Clément, Stingl, Maximilian, Frainay, Clément, Jourdan, Fabien^{Aff1, Aff4}, Poupin, Nathalie^{Aff1, IDs1285902405845z_cor11}

Genomic, functional, and metabolic enhancements in multidrug-resistant Enterobacter bugandensis facilitating its persistence and succession in the International Space Station

Sengupta, Pratyay^{Aff1, Aff2, Aff3}, Muthamilselvi Sivabalan, Shobhan Karthick, Singh, Nitin Kumar, Raman, Karthik^{Aff1, Aff2, Aff3, Aff5, IDs40168024017771_cor4}, Venkateswaran, Kasthuri^{Aff4, IDs40168024017771_cor5}

Predicting microbial interactions with approaches based on flux balance analysis: an evaluation

Joseph, Clémence, Zafeiropoulos, Haris, Bernaerts, Kristel, Faust, Karoline^{Aff1, IDs12859024056517_cor4}

Metabolic modelling of anaerobic amino acid uptake and storage by fermentative polyphosphate accumulating organisms

Thomson, R. ^a, Close, K. ^a, Riley, A. ^a, Batstone, D.J. ^b, Oehmen, A. ^{a, ⁎}

Discovering Essential Multiple Gene Effects Through Large Scale Optimization: An Application to Human Cancer Metabolism

Occhipinti, A., Hamadi, Y., Kugler, H., Wintersteiger, C.M., Yordanov, B., Angione, C.

LGEM+: A First-Order Logic Framework for Automated Improvement of Metabolic Network Models Through Abduction

Gower, Alexander H., Korovin, Konstantin, Brunnsåker, Daniel, Tiukova, Ievgeniia A., King, Ross D.

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CFSA: Comparative flux sampling analysis as a guide for strain design

R.P. van Rosmalen, S. Moreno-Paz, Z.E. Duman-Özdamar, M. Suarez-Diez

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Frameworks for Automated Discovery in Systems Biology

Gower, Alexander, 1993

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Quantifying beta cell function in the preclinical stages of type 1 diabetes

Galderisi, Alfonso, Carr, Alice L. J., Martino, Mariangela, Taylor, Peter, Senior, Peter, Dayan, Colin^{Aff3, IDs00125023060115_cor6}

Refining microbial community metabolic models derived from metagenomics using reference-based taxonomic profiling

Marwan E. Majzoub, Laurence D. W. Luu, Craig Haifer, Sudarshan Paramsothy, Thomas J. Borody, Rupert W. Leong, Torsten Thomas, Nadeem O. Kaakoush

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