Sökresultat - "SATELLITE DNA"

Unveiling nucleosome dynamics: A comparative study using all-atom and coarse-grained simulations enhanced by principal component analysis.

Ghosh Moulick, Abhik¹ (AUTHOR), Patel, Rutika^1,2 (AUTHOR), Onyema, Augustine^1,2 (AUTHOR), Loverde, Sharon M.^1,2,3 (AUTHOR) sharon.loverde@csi.cuny.edu

Multi-tissue characterization of the constitutive heterochromatin proteome in Drosophila identifies a link between satellite DNA organization and transposon repression.

Chavan, Ankita^1,2,3 (AUTHOR), Skrutl, Lena^1,2 (AUTHOR), Uliana, Federico^1,3 (AUTHOR), Pfister, Melanie¹ (AUTHOR), Brändle, Franziska^1,2 (AUTHOR), Tirian, Laszlo⁴ (AUTHOR), Baptista, Delora⁵ (AUTHOR), Handler, Dominik⁴ (AUTHOR), Burke, David⁶ (AUTHOR), Sintsova, Anna⁷ (AUTHOR), Beltrao, Pedro⁸ (AUTHOR), Brennecke, Julius⁴ (AUTHOR), Jagannathan, Madhav^1,3 (AUTHOR) madhav.jagannathan@bc.biol.ethz.ch

Genome Studies in Amaranthus cruentus L. and A. hypochondriacus L. Based on Repeatomic and Cytogenetic Data.

Amosova, Alexandra V.¹ (AUTHOR), Yurkevich, Olga Yu.¹ (AUTHOR), Semenov, Alexey R.¹ (AUTHOR), Samatadze, Tatiana E.¹ (AUTHOR), Sokolova, Diana V.² (AUTHOR), Artemyeva, Anna M.² (AUTHOR), Zoshchuk, Svyatoslav A.¹ (AUTHOR), Muravenko, Olga V.¹ (AUTHOR) omur@eimb.ru

Locus-specific differential expression of human satellite sequences in the nuclei of cancer cells and heat-shocked cells.

Rabeler, Christina¹ (AUTHOR), Paterna, Nicholas² (AUTHOR), Potluri, Rajiv¹ (AUTHOR), D'Alessandro, Lia R.¹ (AUTHOR), Bhatia, Anusha¹ (AUTHOR), Chen, Shu Yi¹ (AUTHOR), Lee, Johanna¹ (AUTHOR), Abeje, Bereketab¹ (AUTHOR), Lipchin, Benjamin¹ (AUTHOR), Carone, Benjamin R² (AUTHOR), Carone, Dawn M.¹ (AUTHOR) dcarone1@swarthmore.edu

BeetRepeats: reference sequences for genome and polymorphism annotation in sugar beet and wild relatives.

Schmidt, Nicola¹ (AUTHOR), Maiwald, Sophie¹ (AUTHOR), Mann, Ludwig¹ (AUTHOR), Weber, Beatrice¹ (AUTHOR), Seibt, Kathrin M.¹ (AUTHOR), Breitenbach, Sarah¹ (AUTHOR), Liedtke, Susan¹ (AUTHOR), Menzel, Gerhard¹ (AUTHOR), Weisshaar, Bernd² (AUTHOR), Holtgräwe, Daniela² (AUTHOR), Heitkam, Tony^1,3 (AUTHOR) tony.heitkam@tu-dresden.de

Turnover of retroelements and satellite DNA drives centromere reorganization over short evolutionary timescales in Drosophila.

Courret, Cécile¹ (AUTHOR) ccourret@ur.rochester.edu, Hemmer, Lucas W.¹ (AUTHOR), Wei, Xiaolu¹ (AUTHOR), Patel, Prachi D.² (AUTHOR), Chabot, Bryce J.² (AUTHOR), Fuda, Nicholas J.¹ (AUTHOR), Geng, Xuewen¹ (AUTHOR), Chang, Ching-Ho³ (AUTHOR), Mellone, Barbara G.^2,4 (AUTHOR), Larracuente, Amanda M.¹ (AUTHOR) ccourret@ur.rochester.edu

Analysis of pericentromere composition and structure elucidated the history of the Hieracium alpinum L. genome, revealing waves of transposable elements insertions.

Belyayev, Alexander¹ (AUTHOR) alexander.belyayev@ibot.cas.cz, de la Peña, Begoña Quirós^1,2 (AUTHOR), Corrales, Simon Villanueva¹ (AUTHOR), Ling Low, Shook¹ (AUTHOR), Frejová, Barbora¹ (AUTHOR), Sejfová, Zuzana¹ (AUTHOR), Josefiová, Jiřina¹ (AUTHOR), Záveská, Eliška¹ (AUTHOR), Bertrand, Yann J.K.¹ (AUTHOR), Chrtek, Jindřich^1,2 (AUTHOR), Mráz, Patrik² (AUTHOR)

Repeatome Analysis and Satellite DNA Chromosome Patterns in Hedysarum Species.

Yurkevich, Olga Yu.¹ (AUTHOR), Samatadze, Tatiana E.¹ (AUTHOR), Zoshchuk, Svyatoslav A.¹ (AUTHOR), Semenov, Alexey R.¹ (AUTHOR), Morozov, Alexander I.² (AUTHOR), Selyutina, Inessa Yu.³ (AUTHOR), Amosova, Alexandra V.¹ (AUTHOR), Muravenko, Olga V.¹ (AUTHOR) omur@eimb.ru

Cytogenomic Characterization of Murine Neuroblastoma Cell Line Neuro-2a and Its Two Derivatives Neuro-2a TR-Alpha and Neuro-2a TR-Beta.

Hergenhahn, Lioba¹ (AUTHOR) lioba.hergenhahn@med.uni-jena.de, Padutsch, Niklas¹ (AUTHOR) niklas.padutsch@med.uni-jena.de, Azawi, Shaymaa¹ (AUTHOR) shayma.alazawi@yahoo.com, Weiskirchen, Ralf² (AUTHOR) rweiskirchen@ukaachen.de, Liehr, Thomas¹ (AUTHOR) thomas.liehr@med.uni-jena.de, Rinčic, Martina³ (AUTHOR) mrincic@hiim.hr

Satellitome analysis on the pale-breasted thrush Turdus leucomelas (Passeriformes; Turdidae) uncovers the putative co-evolution of sex chromosomes and satellite DNAs.

Souza, Guilherme Mota¹, Kretschmer, Rafael², Toma, Gustavo Akira¹, de Oliveira, Alan Moura¹, Deon, Geize Aparecida¹, Setti, Princia Grejo¹, Zeni dos Santos, Rodrigo³, Goes, Caio Augusto Gomes³, Del Valle Garnero, Analía⁴, Gunski, Ricardo José⁴, de Oliveira, Edivaldo Herculano Correa^5,6, Porto-Foresti, Fabio³, Liehr, Thomas⁷ thomas.liehr@med.uni-jena.de, Utsunomia, Ricardo³, de Bello Cioffi, Marcelo¹

Prevalence of trypanosomiasis caused by Trypanosoma evansi (Kinetoplastea, Trypanosomatidae) in domestic ruminants from Southern Punjab, Pakistan.

Tariq, Muhammad¹ tariq@stu.njau.edu.cna, Badshah, Farhad² farhadbadshah999@gmail.com, Khan, Muhammad Salman² salman.khan@awkum.edu.pk, Ibáñez-Arancibia, Eliana^3,4,5 e.ibanez05@ufromail.cl, De los Ríos-Escalante, Patricio R.^5,6 prios@uct.cl, Khan, Naimat Ullah⁷ naimatullahkhan19@yahoo.com, Naeem, Sadaf⁸ sadafnaeemhashmi@stu.xjtu.edu.cn, Manzoor, Azka⁹ azkamanzoor15@gmail.com, Tahir, Rabia¹⁰ rabiatahir-01@hotmail.com, Mubashir, Muhammad¹ mubashir@stu.njau.edu.cn, Ilyas, Muhammad¹¹ milyasaslam381@gmail.com, Manzoor, Ghulam Ali¹² alibaloch1878@gmail.com, Said, Mourad Ben^13,14 bensaidmourad83@yahoo.fr

Satellite DNAs and the evolution of the multiple X1X2Y sex chromosomes in the wolf fish Hoplias malabaricus (Teleostei; Characiformes).

Toma, Gustavo Akira¹, Sember, Alexandr², Goes, Caio Augusto Gomes³, Kretschmer, Rafael⁴, Porto-Foresti, Fabio³, Bertollo, Luiz Antônio Carlos¹, Liehr, Thomas⁵ thomas.liehr@med.uni-jena.de, Utsunomia, Ricardo³, de Bello Cioffi, Marcelo¹

Evolutionary Dynamics of Satellite DNA Repeats across the Tettigoniidae Family: Insights from Genomic Analysis.

Majid, Muhammad¹ (AUTHOR) majidento07@snnu.edu.cn, Khan, Hashim¹ (AUTHOR), Liu, Xuanzeng¹ (AUTHOR), Shaheer, Muhammad² (AUTHOR), Huang, Yuan¹ (AUTHOR) yuanh@snnu.edu.cn

Species of the Sections Hedysarum and Multicaulia of the Genus Hedysarum (Fabaceae): Taxonomy, Distribution, Chromosomes, Genomes, and Phylogeny.

Yurkevich, Olga Yu.¹ (AUTHOR), Samatadze, Tatiana E.¹ (AUTHOR), Zoshchuk, Svyatoslav A.¹ (AUTHOR), Amosova, Alexandra V.¹ (AUTHOR), Muravenko, Olga V.¹ (AUTHOR) omur@eimb.ru

Comprehensive analysis of the Xya riparia genome uncovers the dominance of DNA transposons, LTR/Gypsy elements, and their evolutionary dynamics.

Khan, Hashim¹ (AUTHOR), Yuan, Huang¹ (AUTHOR), Liu, Xuanzeng¹ (AUTHOR), Nie, Yimeng¹ (AUTHOR), Majid, Muhammad¹ (AUTHOR) majidento07@snnu.edu.cn

SatXplor—a comprehensive pipeline for satellite DNA analyses in complex genome assemblies.

Volarić, Marin¹ (AUTHOR), Meštrović, Nevenka¹ (AUTHOR), Despot-Slade, Evelin¹ (AUTHOR)

Genome Variability in Artificial Allopolyploid Hybrids of Avena sativa L. and Avena macrostachya Balansa ex Coss. et Durieu Based on Marker Sequences of Satellite DNA and the ITS1–5.8S rDNA Region.

Amosova, Alexandra V.¹ (AUTHOR), Gnutikov, Alexander A.^2,3 (AUTHOR), Rodionov, Alexander V.² (AUTHOR), Loskutov, Igor G.³ (AUTHOR), Nosov, Nikolai N.² (AUTHOR), Yurkevich, Olga Yu.¹ (AUTHOR), Samatadze, Tatiana E.¹ (AUTHOR), Zoshchuk, Svyatoslav A.¹ (AUTHOR), Muravenko, Olga V.¹ (AUTHOR) omur@eimb.ru

The repetitive DNA landscape in the brizantha agamic complex of Urochloa P. Beauv.

Correa, Caio T. Rodrigues¹ (AUTHOR), Vaio, Magdalena² (AUTHOR), Barrios, Sanzio C.L.³ (AUTHOR), do Valle, Cacilda B.³ (AUTHOR), Torres, Giovana A.¹ (AUTHOR), Techio, Vânia H.¹ (AUTHOR) vhtechio@ufla.br

Genomic landscape of repetitive DNAs in Neotropical electric fishes.

do Nascimento Moreira, Camila^1,2 (AUTHOR) cmoreirabio@gmail.com, Crampton, William Gareth Richard³ (AUTHOR) crampton@ucf.edu, de Andrade Affonso, Pedro Henrique¹ (AUTHOR) phaffonso@gmail.com, Martins, Cesar¹ (AUTHOR) cesar.martins@unesp.br, Cardoso, Adauto Lima¹ (AUTHOR) adautolimacardoso@gmail.com

Distinct structural variants and repeat landscape shape the genomes of the ancient grapes Aglianico and Falanghina.

Aversano, Riccardo¹ (AUTHOR) raversan@unina.it, Iovene, Marina² (AUTHOR) marina.iovene@ibbr.cnr.it, Esposito, Salvatore^2,3 (AUTHOR), L'Abbate, Alberto⁴ (AUTHOR), Villano, Clizia¹ (AUTHOR), Di Serio, Ermanno¹ (AUTHOR), Cardone, Maria Francesca⁵ (AUTHOR), Bergamini, Carlo⁵ (AUTHOR), Cigliano, Riccardo Aiese⁶ (AUTHOR), D'Amelia, Vincenzo² (AUTHOR), Frusciante, Luigi¹ (AUTHOR), Carputo, Domenico¹ (AUTHOR)