Sökresultat - "Spatial transcriptomics"

Integrating Tissue Microarray to GeoMx® Digital Spatial Profiler : Spatial Transcriptomics Assay with Bioinformatics Analysis

Dechamma, Deshica^Aff4, Moorthy, Manju^Aff4, Bhat, Vijayalakshmi^Aff4, Ramaswamy, Gopalakrishna^Aff4

Raghavachari, Nalini^Aff2, Garcia-Reyero, Natalia^Aff3, Walker, John M.^Aff1

Spatial Genomic Approaches to Investigate HOX Genes in Mouse Brain Tissues

Shelar, Ashish^Aff4, Dighe, Anasuya^Aff5

De Kumar, Bony^Aff2, Shelar, Ashish^Aff3, Walker, John M.^Aff1

Single Cell VDJ Sequencing of Normal and Malignant B and T Cells

Schnormeier, Ann-Kathrin^Aff3, Budeus, Bettina^Aff3

Küppers, Ralf^Aff2, Walker, John M.^Aff1

Comparative Methods for Demystifying Spatial Transcriptomics

Sammeth, Michael^{Aff5, Aff6}, Mudra, Susann^Aff5, Bialdiga, Sina^Aff5, Hartmannsberger, Beate^Aff7, Kramer, Sofia^Aff7, Rittner, Heike^Aff7

Setubal, João Carlos^Aff2, Stadler, Peter F.^Aff3, Stoye, Jens^Aff4, Walker, John M.^Aff1

Towards Spatial Transcriptomics-Guided Pathological Image Recognition with Batch-Agnostic Encoder

Nishimura, Kazuya, Bise, Ryoma, Kojima, Yasuhiro

2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI)

Designing Oligonucleotide-Based FISH Probe Sets with PaintSHOP

Perez, Monika W.^Aff3, Camplisson, Conor K.^Aff3, Beliveau, Brian J.^{Aff3, Aff4, Aff5}

Haimovich, Gal^Aff2, Walker, John M.^Aff1

Genome-Wide RNA Tomography in the Mouse Whole Olfactory Mucosa

Moussa, Eman Abou^Aff4, Makhlouf, Melanie^Aff4, Mathew, Lisa S.^Aff4, Saraiva, Luis R.^{Aff4, Aff5, Aff6}

Goldstein, Bradley J.^Aff2, Matsunami, Hiroaki^Aff3, Walker, John M.^Aff1

A Hands-On Guide to Generate Spatial Gene Expression Profiles by Integrating scRNA-seq and 3D-Reconstructed Microscope-Based Plant Structures

Neumann, Manuel^Aff4, Muino, Jose M.^Aff4

Riechmann, José Luis^Aff2, Ferrándiz, Cristina^Aff3, Walker, John M.^Aff1

Spatial Transcriptomics in Kidney Tissue

Raghubar, Arti M.^{Aff5, Aff6, Aff7, Aff8, Aff9}, Crawford, Joanna^Aff9, Jones, Kahli^{Aff9, Aff10}, Lam, Pui Y.^Aff9, Andersen, Stacey B.^{Aff11, Aff12}, Matigian, Nicholas A.^Aff13, Ng, Monica S. Y.^{Aff5, Aff6, Aff9, Aff14}, Healy, Helen^{Aff5, Aff6, Aff7}, Kassianos, Andrew J.^{Aff5, Aff6, Aff7}, Mallett, Andrew J.^{Aff7, Aff9, Aff15, Aff16}

Hewitson, Tim D.^Aff2, Toussaint, Nigel D.^Aff3, Smith, Edward R.^Aff4, Walker, John M.^Aff1

UPSST: Unsupervised Pathology Domain Identification by Integrating Tissue Morphology, Imputing and Clustering of Spatial Transcriptomics With GAT

Chen, G., Hong, X., Zhang, L., Ding, L., Li, L., Jiang, C., Ni, J., Miao, K., Pan, X.

Integrating Autoencoder and Multi-View Graph Convolutional Networks for Spatial Domains Identification

Meng, Fanhao, Li, Feng, Gao, Yanru, Ge, Daohui, Zhu, Rong, Shang, Junliang

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Spatial domains identification based on multi-view contrastive learning in spatial transcriptomics

Gao, Yanru, Li, Feng, Meng, Fanhao, Ge, Daohui, Ren, Qianqian, Shang, Junliang

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Multi-modal Spatial Clustering for Spatial Transcriptomics Utilizing High-resolution Histology Images

Li, Bingjun, Karami, Mostafa, Junayed, Masum Shah, Nabavi, Sheida

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

spGCLF: a versatile deep graph contrastive learning framework for spatial transcriptomics analysis

Chen, Xiang, Yu, Junnan, Li, Min

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Robust 3D reconstruction and cell-type deconvolution approach for spatial transcriptomics by hybrid graph learning and iterative computation

Zhang, Zhengqian, Chen, Binghong, Wang, Jialiang, Wang, Haiyu, Yu, Tianshuo, Ren, Junjun, Zhang, Mingtao, Liu, Chongyao, Jiang, Wei, Liu, Yongzhuang

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Masked Graph Autoencoders with Contrastive Augmentation for Spatially Resolved Transcriptomics Data

Fang, Donghai, Zhu, Fangfang, Xie, Dongting, Min, Wenwen

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Improve spatial domain identification for spatial transcriptomics using high-order neighbor feature hybrid graph convolutional networks

Liang, Xuena, Yuan, Shasha, Li, Shengjun, Wang, Juan

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Masked adversarial neural network for cell type deconvolution in spatial transcriptomics

Huang, Lin, Liu, Xiaofei, Wang, Shunfang, Min, Wenwen

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Boundary-Guided Learning for Gene Expression Prediction in Spatial Transcriptomics

Qu, Mingcheng, Wu, Yuncong, Di, Donglin, Su, Anyang, Su, Tonghua, Song, Yang, Fan, Lei

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

STARGATE: Spatial Transcriptomic Analysis with Recurrent and Graph Attention Techniques using Ensemble Learning

Li, Ning, Badai, Jiayidaer, Chen, Dengjie, Xiao, Ming, Zhang, Le

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)