Search Results - "bioinformatics tool"

Terminator: A Software Package for Fast and Local Optimization of His-Tag Placement for Protein Affinity Purification

Gerulskis, Rokas^aff1, Minteer, Shelley D.^{aff1, aff2}

AnnoDUF: A Web-Based Tool for Annotating Functions of Proteins Having Domains of Unknown Function

Vishwakarma, Aman, Padmashali, Namrata, Thiyagarajan, Saravanamuthu

Evaluating seven bioinformatics platforms for tertiary analysis of genomic data from whole exome sequencing in a pilot group of patients

Bastida-Lertxundi, Nerea^{j_almed-2025-0031_aff_002}, Martí-Carrera, Itxaso^{j_almed-2025-0031_aff_005}, Laña-Ruíz, Borja^{j_almed-2025-0031_aff_004}, Martínez-Múgica Barbosa, Otilia^{j_almed-2025-0031_aff_004}, Muguerza-Iraola, Raquel^{j_almed-2025-0031_aff_002}, Sáez-Villaverde, Raquel^{j_almed-2025-0031_aff_002}, Crettaz, Julien S.^{j_almed-2025-0031_aff_002}

CompàreGenome: a command-line tool for genomic diversity estimation in prokaryotes and eukaryotes

Gabriele Moro, Rossano Atzeni, Ali Al-Subhi, Maria Giovanna Marche

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Elucidating the functional impact of G137V and G144R variants in Maroteaux Lamy’s Syndrome by Molecular Dynamics Simulation

Madhana Priya, N., Archana Pai, P., Thirumal Kumar, D., Gnanasambandan, R., Magesh, R.^{Aff1, IDs11030023106948_cor5}

Unraveling the impact of genome assembly on bacterial typing: a one health perspective

Déborah Merda, Meryl Vila-Nova, Mathilde Bonis, Anne-Laure Boutigny, Thomas Brauge, Marina Cavaiuolo, Amandine Cunty, Antoine Regnier, Maroua Sayeb, Noémie Vingadassalon, Claire Yvon, Virginie Chesnais

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Virusplot: a web server for viral integration analysis and visualization

Erqiang Hu, Jianhong An, Adam J Gersten, Nicole Wu, Nicole Kawachi, Jing Zhu, Gregory Rosenblatt, Stelby Augustine, Richard V. Smith, Jeffrey E Segall, Harry Ostrer, Antonio L Amelio, Christine H. Chung, Michael B. Prystowsky, Thomas J. Ow, Wenjun Deng, Shanye Yin

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Typic: A Practical and Robust Tool to Rank Proteotypic Peptides for Targeted Proteomics

Pauletti, Bianca A.^aff1, Granato, Daniela C.^aff1, M. Carnielli, Carolina^aff1, Câmara, Guilherme A.^aff1, Normando, Ana Gabriela C.^aff1, Telles, Guilherme P.^aff2, Leme, Adriana F. Paes^aff1

Mfind: a tool for DNA barcode analysis in angiosperms and its relationship with microsatellites using a sliding window algorithm

Rios-Willars, Ernesto^{Aff1, IDs00425024044203_cor1}, Chirinos-Arias, Michelle C.

CoMIT: a bioinformatic pipeline for risk-based prediction of COVID-19 test inclusivity

Walker, Diane M.^Aff1, Smith, Wendy A.^Aff1, Gale, Lia, Wolff, Jacob T., Healy, Connor P., Van Hollebeke, Hannah F., Stephenson, Ashlie, Kim, Marianne^{Aff1, IDs1285902506046y_cor1}

PINE: An Automation Tool to Extract and Visualize Protein-Centric Functional Networks

Sundararaman, Niveda^aff1, Go, James^aff1, Robinson, Aaron E.^aff1, Mato, José M.^aff2, Lu, Shelly C.^aff3, Van Eyk, Jennifer E.^aff1, Venkatraman, Vidya^aff1

plotnineSeqSuite: a Python package for visualizing sequence data using ggplot2 style

Tianze Cao, Qian Li, Yuexia Huang, Anshui Li

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A multi-layer graph analytics to identify bioinformatics tool usage practices from tool directories and PubMed indexed cross-citations

Huang, Angkana, Hoonlor, Apirak

2016 International Computer Science and Engineering Conference (ICSEC)

Empowering biologists to decode omics data: the Genekitr R package and web server

Yunze Liu, Gang Li

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Identification of mutations that causes glucose-6-phosphate transporter defect in tunisian patients with glycogenosis type 1b

Latifa Chkioua, Yessine Amri, Chayma Sahli, Ferdawes Ben Rhouma, Amel Ben Chehida, Neji Tebib, Taieb Messaoud, Hassen Ben Abdennebi, Sandrine Laradi

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Applying the digital data and the bioinformatics tools in SARS-CoV-2 research

Meng Tan, Jiaxin Xia, Haitao Luo, Geng Meng, Zhenglin Zhu

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Update on the moFF Algorithm for Label-Free Quantitative Proteomics

Argentini, Andrea^{aff1, aff2}, Staes, An^{aff1, aff2}, Grüning, Björn^aff3, Mehta, Subina^aff4, Easterly, Caleb^aff4, Griffin, Timothy J.^aff4, Jagtap, Pratik^aff4, Impens, Francis^{aff1, aff2}, Martens, Lennart^{aff1, aff2}

A global Corynebacterium diphtheriae genomic framework sheds light on current diphtheria reemergence

Hennart, Mélanie, Crestani, Chiara, Bridel, Sébastien, Armatys, Nathalie, Brémont, Sylvie, Carmi-Leroy, Annick, Landier, Annie, Passet, Virginie, Fonteneau, Laure, Vaux, Sophie, Toubiana, Julie, Badell, Edgar, Brisse, Sylvain

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GENCODE Annotation for the Human and Mouse Genome: A User Perspective

Musleh, Saleh^Aff3, Alazmi, Meshari^Aff4, Alam, Tanvir^Aff3

Abugessaisa, Imad, editor^Aff1, Kasukawa, Takeya, editor^Aff2

In vitro Synergistic Activities of Fosfomycin in Combination with Other Antimicrobial Agents Against Carbapenem-Resistant Escherichia coli Harboring blaNDM-1 on the IncN2 Plasmid and a Study of the Genomic Characteristics of These Pathogens

Kaewnirat K, Chuaychob S, Chukamnerd A, Pomwised R, Surachat K, Phoo MTP, Phaothong C, Sakunrang C, Jeenkeawpiam K, Hortiwakul T, Charernmak B, Chusri S

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