Sökresultat - "cgMLST"

Evaluation of nationwide analysis surveillance for methicillin-resistant Staphylococcus aureus within Genomic Medicine Sweden

Hallbäck, Erika Tång, Björkman, Jonas T., Dyrkell, Fredrik, Welander, Jenny, Fang, Hong, Sylvin, Isak, Kaden, René, 1975, Eilers, Hinnerk, Strand, Anna Söderlund, Mernelius, Sara, Berglind, Linda, Lagos, Amaya Campillay, Engstrand, Lars, Sikora, Per, Mölling, Paula

electronic

Environmental investigation of 10 cases of nosocomial Bacillus cereus bacteraemia between 2018 and 2023

Elissa Maalouf, Barthélémy Tosello, Sophie Schipani, Frédérique Gouriet, Claire Nicaise, Alix Lamoureux, Farah Beih, Agnès Delaby, Véronique Roux, Remi N. Charrel, Carole Eldin

electronic resource

Visa

Genomic typing, antimicrobial resistance gene, virulence factor and plasmid replicon database for the important pathogenic bacteria Klebsiella pneumoniae

Andrey Shelenkov, Anna Slavokhotova, Yulia Mikhaylova, Vasiliy Akimkin

electronic resource

Visa

Recurrent, ICD-associated L. monocytogenes bacteraemia with multiple septic pulmonary embolisms over a 2-year period

Füszl, Astrid^{Aff1, IDs1501002402209w_cor1}, Schindler, Stefanie, Heger, Florian, Markowicz, Mateusz, Indra, Alexander^{Aff1, Aff2}, Pietzka, Ariane, Hyden, Patrick, Cabal, Adriana, Wenzel, René R.

KleTy: integrated typing scheme for core genome and plasmids reveals repeated emergence of multi-drug resistant epidemic lineages in Klebsiella worldwide

Heng Li, Xiao Liu, Shengkai Li, Jie Rong, Shichang Xie, Yuan Gao, Ling Zhong, Quangui Jiang, Guilai Jiang, Yi Ren, Wanping Sun, Yuzhi Hong, Zhemin Zhou

electronic resource

Visa

Unraveling the impact of genome assembly on bacterial typing: a one health perspective

Déborah Merda, Meryl Vila-Nova, Mathilde Bonis, Anne-Laure Boutigny, Thomas Brauge, Marina Cavaiuolo, Amandine Cunty, Antoine Regnier, Maroua Sayeb, Noémie Vingadassalon, Claire Yvon, Virginie Chesnais

electronic resource

Visa

Pasteurella multocida from deep nasal swabs and tracheobronchial lavage in bovine calves from Sweden

Mattias Myrenås, Märit Pringle, Boel Harbom, Björn Bengtsson

electronic resource

Visa

The genetic relationship between human and pet isolates: a core genome multilocus sequence analysis of multidrug-resistant bacteria

Genath, Antonia^{Aff1, Aff2, IDs13756024014577_cor1}, Hackmann, Carolin^{Aff1, Aff3}, Denkel, Luisa, Weber, Anna, Maechler, Friederike, Kola, Axel, Schwarz, Stefan^{Aff4, Aff5}, Gastmeier, Petra, Leistner, Rasmus^{Aff1, Aff6}

Genomic insights of Salmonella isolated from dry fermented sausage production chains in Spain and France

Ferrer-Bustins, Núria, Yvon, Claire, Martín, Belén, Leclerc, Vincent, Leblanc, Jean-Charles, Corominas, Laura, Sabaté, Sara^{Aff4, Aff5}, Tolosa-Muñoz, Eva, Chacón-Villanueva, Carme, Bover-Cid, Sara, Cadel-Six, Sabrina^{Aff2, IDs41598024621419_cor11}, Jofré, Anna^{Aff1, IDs41598024621419_cor12}

Introduction and spread of vancomycin-resistant Enterococcus faecium (VREfm) at a German tertiary care medical center from 2004 until 2010: a retrospective whole-genome sequencing (WGS) study of the molecular epidemiology of VREfm

Caplunik-Pratsch, Aila^{Aff1, IDs13756024013794_cor1}, Kieninger, Bärbel, Donauer, Veronika A., Brauer, Johanna M., Meier, Vanessa M. K., Seisenberger, Corinna, Rath, Anca, Loibl, Daniel, Eichner, Anja, Fritsch, Jürgen, Schneider-Brachert, Wulf

Within-host genomic evolution of methicillin-resistant Staphylococcus aureus in long-term carriers

Larsen, Tine Graakjær^{Aff1, Aff2}, Samaniego Castruita, Jose Alfredo, Worning, Peder, Westh, Henrik^{Aff1, Aff3}, Bartels, Mette Damkjær^{Aff1, Aff3, IDs00253023129323_cor1}

Investigating environmental transmission to resolve a Bacillus cereus group outbreak in a neonatal intensive care unit using core genome multilocus sequence typing

Tönnies, Hauke^{Aff1, IDs13756023013590_cor1}, Heep, Axel, Herrmann, Jörg, Lange, Matthias, Mellmann, Alexander, Hamprecht, Axel

Population genetic analysis of clinical Mycobacterium abscessus complex strains in China

Xiangchen Li, Yelei Zhu, Yewei Lu, Kunyang Wu, Yang Che, Xiaomeng Wang, Weixin Wang, Junli Gao, Junshun Gao, Zhengwei Liu, Zhuxian Zhou

electronic resource

Visa; Visa

Genomic insights on cgMLST markers, drug resistance, and urease cluster of Proteus mirabilis strains

Shitao Lian, Yadong Liu, Songnian Hu, Chen Shen, Yinping Ma, Peng Yin, Zilong He

electronic resource

Visa

A core genome MLST scheme for Borrelia burgdorferi sensu lato improves insights into the evolutionary history of the species complex

Hepner, Sabrina, Jolley, Keith A., Castillo-Ramirez, Santiago, Mourkas, Evangelos, Dangel, Alexandra, Wieser, Andreas, Hübner, Johannes, Sing, Andreas, Fingerle, Volker, Margos, Gabriele

electronic

Whole-genome sequencing of soil- and foodborne Bacillus cereus sensu lato indicates no clear association between their virulence repertoire, genomic diversity and food matrix

Jacobs, Bram ^{a, b, c, ⁎}, Bogaerts, Bert ^d, Verhaegen, Marie ^c, Vanneste, Kevin ^d, De Keersmaecker, Sigrid C.J. ^d, Roosens, Nancy H.C. ^d, Rajkovic, Andreja ^b, Mahillon, Jacques ^c, Van Nieuwenhuysen, Tom ^a, Van Hoorde, Koenraad ^a

Antimicrobial resistance and genetic relatedness among Campylobacter coli and Campylobacter jejuni from humans and retail chicken meat in Taiwan

Hsiao-Lun Wei, Ying-Shu Liao, Bo-Han Chen, Ru-Hsiou Teng, You-Wun Wang, Jui-Hsien Chang, Chien-Shun Chiou

electronic resource

Visa; Visa

Core genome multilocus sequence typing schemes for epidemiological investigation of Taylorella equigenitalis and Taylorella asinigenitalis

Kozak, Sofia ^a, Merda, Déborah ^b, Chesnais, Virginie ^b, Breuil, Marie-France ^a, Harrison, Megan ^c, Zdovc, Irena ^d, Golob, Majda ^d, Petry, Sandrine ^{a, ⁎, 1}, Duquesne, Fabien ^{a, 1}

Whole genome sequencing characterization of Clostridioides difficile from Bulgaria during the COVID-19 pandemic

Dobreva, Elina ^{a, ⁎}, Donchev, Deyan ^a, Stoikov, Ivan ^a, Teneva, Deana ^a, Hristova, Rumyana ^a, Murdjeva, Marianna ^b, Vatcheva-Dobrevska, Rossitza ^c, Ivanov, Ivan N. ^a

Uncovering a cryptic Streptococcus suis endemic post-outbreak: Evidence of host switching to humans

Zhu, Shuirong ^{a, 1}, Li, Shengkai ^{c, 1}, Wu, Beibei ^{a, 1}, Yang, Zhangnv ^{a, 1}, Zhang, Yuwen ^d, Chen, Jiancai ^a, Zhang, Yanjun ^a, Fang, Lei ^{b, ⁎}