Search Results - "single‐cell RNA sequencing (scRNA‐seq)"

Characterizing Rare Dormant and Cycling Lineages Using the Watermelon System

Handly-Santana, Abram^Aff3, Oren, Yaara^Aff4

Montagner, Marco^Aff2, Walker, John M.^Aff1

Computational Analysis of Single-Cell RNA-Seq Data

Hwang, Byungjin^Aff4

Song, Qi^Aff2, Tao, Zhipeng^Aff3, Walker, John M.^Aff1

Single-Cell and Spatial Analysis of Emergent Organoid Platforms

Kumar, Aditi^Aff4, Cai, Shuangyi^Aff4, Allam, Mayar^Aff4, Henderson, Samuel^{Aff4, Aff5}, Ozbeyler, Melissa^{Aff4, Aff5}, Saiontz, Lilly^Aff4, Coskun, Ahmet F.^{Aff4, Aff6, Aff7}

Kasid, Usha N.^Aff2, Clarke, Robert^Aff3, Walker, John M.^Aff1

scPerformer-Based Deep Clustering of Single Cell RNA Sequencing Data

Ahmadi, Parisa, Elmi, Naser, Kavousi, Kaveh, Majidi, Babak

2024 10th International Conference on Signal Processing and Intelligent Systems (ICSPIS)

GRNNLink: Predicting gene regulatory links from single-cell RNA-seq data using graph recurrent neural network

Bai, Liang, Wang, Shulin

2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

Laser Capture Microdissection Microdissection –Based mRNA MRNA Expression Microarrays Microarrays and Single-Cell RNA RNA Sequencing in Atherosclerosis Atherosclerosis Research

Zhang, Xi^Aff3, Wang, Zhihua^Aff3, Zhang, Chuankai^Aff3, Li, Yutao^Aff3, Lu, Shu^Aff3, Steffens, Sabine^{Aff3, Aff4}, Mohanta, Sarajo^{Aff3, Aff4}, Weber, Christian^{Aff3, Aff4, Aff5, Aff6}, Habenicht, Andreas^{Aff3, Aff4}, Yin, Changjun^{Aff3, Aff4, Aff6}

Ramji, Dipak^Aff2, Walker, John M.^Aff1

Single Cell RNA Sequencing in NASH

Hundertmark, Jana^Aff3, Berger, Hilmar^Aff3, Tacke, Frank^Aff3

Sarkar, Devanand^Aff2, Walker, John M.^Aff1

Single-cell and spatial transcriptomic analysis reveals that an immune cell-related signature could predict clinical outcomes for microsatellite-stable colorectal cancer patients receiving immunotherapy

单细胞联合空间转录组分析揭示免疫细胞相关特征可以预测微卫星稳定结直肠癌患者接受免疫治疗的临床结局

^{Aff1, Aff2}, ^{Aff1, Aff3}, ^{Aff1, Aff3}, ^{Aff1, Aff3}, ^{Aff1, Aff3, Aff4}, ^{Aff1, Aff3}, ^{Aff1, Aff3}, ^{Aff1, Aff3}, ^{Aff1, Aff3}, ^{Aff1, Aff3}, ^{Aff2, IDjzusB2300679_cor1}, ^{Aff1, Aff3, IDjzusB2300679_cor2}

Single-Cell Genomics

Pal, Aruna^Aff1, Pal, Aruna^Aff2

Exploring a specific type of tissue-resident natural killer cell involved in the anti-tumor and immunotherapy response in human papillomavirus-positive head and neck squamous cell carcinoma using scRNA-seq.

Lin, Wenrong, Ding, Junwen, Li, Qian, Lin, Yuhao, Ruan, Shenjiong, Birkeland, Andrew, Ding, Jianming

application/pdf

Visualization of Single Cell RNA-Seq Data Using t-SNE in R

Zhou, Bo^Aff3, Jin, Wenfei^Aff3

Kidder, Benjamin L.^Aff2, Walker, John M.^Aff1

Mesothelioma cell heterogeneity identified by single cell RNA sequencing

Licun Wu, Zongjie Wang, Amin Zia, Shana O. Kelley, Marc de Perrot

electronic resource

View item

A dataset of single-cell transcriptomic atlas of Bama pig and potential marker genes across seven tissues

Long Chen, Xingyan Tong, Yujie Wu, Can Liu, Chuang Tang, Xu Qi, Fanli Kong, Mingzhou Li, Long Jin, Bo Zeng

electronic resource

View item

Single-cell transcriptomic atlas of the chicken cecum reveals cellular responses and state shifts during Eimeria tenella infection

Jun-Hao Tu, Bo-Gong Liu, Bing-Jin Lin, Hui-Chao Liu, Song-Chang Guo, Qing-Yuan Ouyang, Ling-Zhao Fang, Xi He, Ze-He Song, Hai-Han Zhang

electronic resource

View item

TNBC response to paclitaxel phenocopies interferon response which reveals cell cycle-associated resistance mechanisms

Nicholas L. Calistri, Tiera A. Liby, Zhi Hu, Hongmei Zhang, Mark A. Dane, Sean M. Gross, Laura M. Heiser

electronic resource

View item

Single-cell profiling reveals a reduced epithelial defense system, decreased immune responses and the immune regulatory roles of different fibroblast subpopulations in chronic atrophic gastritis

Lin Lin, Tingxuan Huang, Lizhi Li, Yang Lin, Feng Chen, Ziyi Zheng, Jie Zhou, Yizhe Wang, Weihao You, Yujie Duan, Yawen An, Shiwei He, Weimin Ye

electronic resource

View item

CXCL8 modulates M0 macrophage proliferation and polarization to influence tumor progression in cervical cancer

Xiyan Zhao, Li Yang, Jigang Pan, Zhirui Zeng, Tuo Zhang, Yushi Yang, Jingjing Zhang, Tengxiang Chen, Ziwen Xiao, Wei Pan

electronic resource

View item

Comprehensive analysis of scRNA-seq and bulk RNA-seq reveals the non-cardiomyocytes heterogeneity and novel cell populations in dilated cardiomyopathy

Siyu He, Chunyu Li, Mingxin Lu, Fang Lin, Sangyu Hu, Junfang Zhang, Luying Peng, Li Li

electronic resource

View item

Uncovering key regulatory pathways and prognostic biomarkers in the tumor microenvironment of high-grade serous ovarian cancer through single-cell RNA sequencing and experimental validation

Yue Li, Long Zhao, Ying Tian, Qianqian Zhou, Xia Liu, Shucai Yang, Jinfeng Xu, Chang Zou, Jinling Zhang, Hui Luo

electronic resource

View item; View item

The miR-941/FOXN4/TGF-β feedback loop induces N2 polarization of neutrophils and enhances tumor progression of lung adenocarcinoma

Xiaojing Zhang, Xitong Huang, Xianying Zhang, Lichang Lai, Baoyi Zhu, Peibin Lin, Zhanfang Kang, Dazhong Yin, Dongbo Tian, Zisheng Chen, Jun Gao

electronic resource

View item; View item