We study existence and computability of finite bases for ideals of polynomials over infinitely many variables. In our setting, variables come from a countable logical structure A, and embeddings from A to A act on polynomials by renaming variables. First, we give a sufficient and necessary condition for A to guarantee the following generalisation of Hilbert's Basis Theorem: every polynomial ideal which is equivariant, i.e. invariant under renaming of variables, is finitely generated. Second, we develop an extension of classical Buchberger's algorithm to compute a Gr\"obner basis of a given equivariant ideal. This implies decidability of the membership problem for equivariant ideals. Finally, we sketch upon various applications of these results to register automata, Petri nets with data, orbit-finitely generated vector spaces, and orbit-finite systems of linear equations.