Abstract Mercury (Hg) isotopes have shown their power of tracing Hg pollution sources in ecosystems, but their potentials for petrogenetic tracing are yet to be explored. Here we conducted Hg isotope analysis for samples collected from major orebodies of the world‐class Jinchuan Ni‐Cu sulfide deposit, China. These samples show large variations of δ202Hg (−2.65 to +0.19‰) and Δ199Hg (−0.16 to +0.19‰). Some of the Δ199Hg values significantly deviate from current estimates on the primitive mantle (Δ199Hg: 0.0 ± 0.1‰, 2SD). The pronounced Hg mass‐independent fractionation (Hg‐MIF) signals, with significant positive (>0.1‰) and negative (