Gera Gulf, a relatively small embayment on the island of Lesvos, serves as a representative example of a semi-enclosed, shallow marine system in Greece. Previous studies revealed that the gulf seafloor is occupied by numerous small reefs that are evenly distributed. Recently, seismic surveys together with gravity coring have shown numerous relict reefs within a fine-grained matrix, hosted at different stratigraphic levels above the inferred Holocene/Pleistocene boundary and locally extending up to the present seabed. The reefs are primarily engineered by the bivalve Ostrea edulis, with additional colonization by other marine organisms such as the coral Cladocora caespitosa. Key features identified in the seismic profiles include the widespread distribution of buried reef structures, erosional surfaces and unconformities also related to a paleolake, extensive fluid concentrations, and a major fault system paralleling the northeastern coast. Seismic record analysis and sediment dating suggest that the flooding of Gera Gulf began approximately 7500 BP, with O. edulis colonizing the seabed shortly thereafter. Buried reef structures were identified within the transgressive and highstand system tracts, characterized by varying sedimentation rates. These variations reflect changing environmental conditions, probably linked to specific climatic events during the Holocene epoch, which contributed to the evolution and shaping of the oyster reef terrain. Given the limited studies on recent or buried oyster reefs in similar environments, this study provides critical insights into the Holocene evolution of oyster reef terrains and their response to climate changes.